Kazuhiro Maeda
前田和勲

Papers

• Kazuhiro Maeda and Hiroyuki Kurata, A Symmetric Dual Feedback System Provides a Robust and Entrainable Oscillator, PLoS ONE, 7(2):e30489, 2012
• Koichi Masaki, Kazuhiro Maeda and Hiroyuki Kurata, Biological Design Principles of Complex Feedback Modules in the E. coli Ammonia Assimilation System, Artificial Life, 18(1):53-90, 2012
• Kazuhiro Maeda and Hiroyuki Kurata, Quasi-multiparameter sensitivity measure for robustness analysis of complex biochemical networks, Journal of Theoretical Biology, 272(1):174-186, 2011
• Kazuhiro Maeda, Yuya Fukano, Daichi Nitta, Shunsuke Yamamichi, and Hiroyuki Kurata, An integrative and practical evolutionary optimization for a complex, dynamic model of biological networks, Bioprocess and Biosystems Engineering, 34(4):433-446, 2011
• Kazuhiro Maeda and Hiroyuki Kurata, Two-phase search (TPS) method: Nonbiased and high-speed parameter search for dynamic models of biochemical networks, IPSJ Transactions on Bioinformatics, 2:2-14, 2009
• Emi Shiraishi, Kazuhiro Maeda, and Hiroyuki Kurata, A gradual update method for simulating the steady-state solution of stiff differential equations in metabolic circuits, Bioprocess and Biosystems Engineering, 32(2):283-288, 2008
• Hiroyuki Kurata, Kentaro Inoue, Kazuhiro Maeda, Koichi Masaki, Yuki Shimokawa, Quanyu Zhao, Extended CADLIVE: a novel graphical notation for design of biochemical network maps and computational pathway analysis, Nucleic Acids Research, 35(20):p.e134, 2007

Technical Reports

• Kazuhiro Maeda and Hiroyuki Kurata, Robustness Analysis of Feedback Systems of Circadian Rhythm, IPSJ SIG Technical Report, 2011-BIO-24(7):1-6, 2011
• Kazuhiro Maeda and Hiroyuki Kurata, Robustness Analysis of Interlocked Feedbacks of Circadian Rhythm, IPSJ SIG Technical Report, 2009-BIO-17(15):1-5, 2009
• Kazuhiro Maeda and Hiroyuki Kurata, Two-phase search (TPS) method: Nonbiased and efficient parameter search for dynamic models of biochemical networks, IPSJ SIG Technical Report, 2008-BIO-14(86):9-12, 2008
• Kazuhiro Maeda, Keisuke Yoshida, and Hiroyuki Kurata, Global Optimization of Large-scale Dynamic Biomolecular Network Model, IPSJ SIG Technical Report, 2007-MPS-66(23):91-94, 2007

Talks

• 前田和勲、倉田博之、A Symmetric Dual Feedback System is a Robust and Entrainable Oscillator for Circadian Rhythm、生命情報科学若手の会　第3回研究会、岡崎、2011年10月16日
• 前田和勲、倉田博之、概日リズムのフィードバックシステムのロバストネス解析、第24回　情報処理学会 バイオ情報学研究会、京都、2011年3月10日
• 前田和勲、倉田博之、概日リズムのインターロックフィードバックのロバストネス解析、第17回　情報処理学会 バイオ情報学研究会、沖縄、2009年5月26日
• 前田和勲、倉田博之、インターロックフィードバックが概日リズムのロバストネスに与える効果、生命情報科学若手の会　第1回研究会、静岡、2009年4月26日
• 前田和勲、倉田博之、Two-phase search (TPS) 法: 動的生化学ネットワークモデルの偏りのない効率的なパラメータ探索、第14回　情報処理学会 バイオ情報学研究会、札幌、2008年9月18日
• Kazuhiro Maeda and Hiroyuki Kurata, CADLIVE for Construction and Dynamic Simulation of Biochemical Networks, Asia Pacific Biochemical Engineering Conference 2007, Taipei, Taiwan, (November 2007)
• 前田和勲、吉田圭佑、倉田博之、大規模な動的生命分子ネットワークモデルのグローバルな最適化、情報処理学会　第66回　数理モデル化と問題解決研究会、名古屋、2007年9月4日

Posters

• Kazuhiro Maeda and Hiroyuki Kurata, Dual Feedback Loop Architecture is a Robust and Entrainable Oscillator for Circadian Rhythm, The 12th International Conference on Systems Biology, PS232, Mannheim, Germany, (August 2011)
• Kazuhiro Maeda, Hiroshi Minamida, Keisuke Yoshida, and Hiroyuki Kurata, Flux Module-based Decomposition for Parameter Optimization in a Dynamic Model of Biochemical Networks, The 2010 Annual Conference of Japanese Society for Bioinformatics, Fukuoka, Japan, (December 2010)
• Kentaro Inoue, Kazuhiro Maeda, Yuki Kato, Hiroyuki Kurata, CADLIVE: A platform for network modeling and simulation of biological pathway, The 2010 Annual Conference of Japanese Society for Bioinformatics, Fukuoka, Japan, (December 2010)
• Kazuhiro Maeda and Hiroyuki Kurata, Quasi-Multiparameter Sensitivity Analysis Reveals Remarkable Robustness of Dual Feedback Circadian Oscillators, The 11th International Conference on Systems Biology, P02.180, Edinburgh, UK, (October 2010)
• Kazuhiro Maeda, Yuya Fukano, Daichi Nitta, Shunsuke Yamamichi, and Hiroyuki Kurata, An integrative strategy for optimizing large-scale biochemical systems, InCoB2010 -The 9th International Conference on Bioinformatics, Tokyo, Japan, (September 2010)
• Hiroshi Minamida, Kazuhiro Maeda, and Hiroyuki Kurata, Exploring huge parameter space of a large-scale model of biochemical networks, InCoB2010 -The 9th International Conference on Bioinformatics, Tokyo, Japan, (September 2010)
• Sayaka Tomeda, Shinpei Tonami, Kentaro Inoue, Kazuhiro Maeda, and Hiroyuki Kurata, Extended CADLIVE: Multi-User Framework and Data Integrator, The 20th International Conference on Genome Informatics, S004, Yokohama, Japan, (December 2009)
• Kazuhiro Maeda and Hiroyuki Kurata, Novel Robustness Analysis Reveals Remarkable Robustness of Dual Feedback Loops in a Circadian Clock, The 20th International Conference on Genome Informatics, P065, Yokohama, Japan, (December 2009)
• 前田和勲、井上健太郎、留田紗彌可、倉田博之、CADLIVE: 生化学ネットワーク構築からシステム解析まで、統合データベースプロジェクトシンポジウム「データベースが拓くこれからのライフサイエンス」、東京、2009年6月12日
• Kazuhiro Maeda and Hiroyuki Kurata, Searching multiple sets of kinetic parameter values reproducing target experimental data in dynamic biochemical models, The 2008 Annual Conference of the Japanese Society for Bioinformatics, Osaka, Japan, (December 2008)
• Kazuhiro Maeda and Hiroyuki Kurata, CADLIVE Supporting Network Construction, Simulation, and Analysis of Biological Systems, The 2nd Taiwan-Japan Young Researchers Conference on Computational and Systems Biology, Tokyo, Japan, (November 2008)
• Kazuhiro Maeda and Hiroyuki Kurata, Parameter Search of Large-scale Dynamic Biochemical Network Models, The 2007 Annual Conference of Japanese Society for Bioinformatics, Tokyo, Japan, (December 2007)
• Yuki Shimokawa, Kazuhiro Maeda, Kentaro Inoue, and Hiroyuki Kurata, CADLIVE: Integration for large-scale network data, The 17th International Conference on Genome Informatics, S02, Yokohama, Japan, (December 2006)

Reviews and Commentaries

• 前田和勲・吉田圭佑・倉田博之、モジュール分割統合法による大規模生命分子ネットワークの最適化、ソフトウェアバイオロジー第６号、化学工学会バイオ部会生物情報分野専門分科会、34-39、2007
• 前田和勲・倉田博之、概日リズムのマルチパラメータ感度解析、ソフトウェアバイオロジー第９号、化学工学会バイオ部会生物情報分野専門分科会、2010

Awards

• 平成21年度IPSJ論文船井若手奨励賞 (Two-phase search (TPS) method: Nonbiased and high-speed parameter search for dynamic models of biochemical networks)

Others

• 前田和勲、リレー紹介: 日本のバイオインフォマティクス研究室 (九州工業大学情報工学部生命情報工学科　倉田研究室)、JSBi News Letter Vol. 19、2009
• Kazuhiro Maeda, Online Lecture: Robustness Analysis of a Dynamic Model of Biochemical Networks, The 5th Virtual Training Workshop on Bioinformatics, Asian Bioinformatics Research and Education Network, 2011
• 倉田博之・前田和勲・井上健太郎、医学や環境へのバイオインフォマティクスの進展、化学工学会バイオ部会ニュースレター No.29、2012